Information for 13-AATAAAGGTTTATTGC (Motif 16)

C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C
Reverse Opposite:
C A T G G A T C G T C A C T G A C G A T C G T A G T C A C T G A G T A C A G T C A C G T C G A T G A C T C G T A A C G T G A C T
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.690
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets57.0 +/- 25.1bp
Average Position of motif in Background59.7 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC----
----NAATTTTATTACCNNN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.69
Offset:7
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC
-------TTTTATTGC
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.68
Offset:7
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC--
-------TTTTATGGCTN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC
------NTTTTATGAC
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC-
-----DGWTTTATGRCN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC----
----NAATTTTATTACCTNN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC---
--NTNAATTTTATTGNATT
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC-
------NTTTTATTACN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC---
--ANTAATTTTATGGCCGN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T A C G T
A C G T A C G T G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AATAAAGGTTTATTGC---
---TNAATTTTATTACCTN
 C G T A G T C A C G A T C G T A C G T A C G T A T A C G C A T G G A C T A C G T C G A T C G T A A G C T C A G T C T A G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A