Information for 3-AYTTGGCAGR (Motif 3)

G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
Reverse Opposite:
A G C T G A T C C G A T A T C G A T G C G T A C G C T A T C G A T C A G C G A T
p-value:1e-21
log p-value:-4.839e+01
Information Content per bp:1.549
Number of Target Sequences with motif120.0
Percentage of Target Sequences with motif15.02%
Number of Background Sequences with motif2665.2
Percentage of Background Sequences with motif5.70%
Average Position of motif in Targets52.4 +/- 28.0bp
Average Position of motif in Background50.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:AYTTGGCAGR
-CTTGGCAA-
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AYTTGGCAGR
NNTTGGCANN
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:AYTTGGCAGR
-NTTGGCANN
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.84
Offset:2
Orientation:forward strand
Alignment:AYTTGGCAGR
--TTGGCA--
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AYTTGGCAGR
ARNTGACA--
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:AYTTGGCAGR
GGTTGGCAT-
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.76
Offset:2
Orientation:forward strand
Alignment:AYTTGGCAGR
--TTGACAGC
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AYTTGGCAGR
--YTGWCADY
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AYTTGGCAGR
--TTGACAGG
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AYTTGGCAGR-
-VBTGWCAGCB
 G C T A A G T C A G C T C G A T C A T G T A C G T A G C G C T A C T A G T C G A A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C