Information for 11-CCTTGAGAGG (Motif 37)

G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G
Reverse Opposite:
G T A C A G T C C G A T A G T C A G C T A G T C C G T A C G T A C A T G C A T G
p-value:1e-6
log p-value:-1.441e+01
Information Content per bp:1.776
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif226.5
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets43.0 +/- 29.1bp
Average Position of motif in Background49.9 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CCTTGAGAGG--
-CTTGAGTGGCT
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CCTTGAGAGG-
-BTBRAGTGSN
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CCTTGAGAGG--
--TTGAGTGSTT
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CCTTGAGAGG-
-CTYRAGTGSY
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGAGAGG-----
NTNNTTAAGTGGNTNAN
 A C G T A C G T G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCTTGAGAGG--
--TTRAGTGSYK
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCTTGAGAGG-
--TTAAGTGGT
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCTTGAGAGG
--TTGACAGC
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCTTGAGAGG-
--TTAAGTGGN
 G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T
A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGAGAGG-----
NTNNTTAAGTGGTTANN
 A C G T A C G T G T A C G T A C C G A T C G A T C T A G C T G A A C T G C G T A A C T G C A T G A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G