Information for 11-GTCAGAAGDGCACTGA (Motif 15)

A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
Reverse Opposite:
A C G T A T G C C G T A A C T G C G A T T A C G A T G C G A C T A G T C A C G T A G C T A G T C A C G T A C T G C T G A A G T C
p-value:1e-10
log p-value:-2.353e+01
Information Content per bp:1.809
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.7 +/- 21.3bp
Average Position of motif in Background48.7 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA/MA0729.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTCAGAAGDGCACTGA
GAGGTCAAAAGGTCAATG-
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G A C G T

Rarg/MA0859.1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTCAGAAGDGCACTGA
AAGGTCAAAAGGTCAA---
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTCAGAAGDGCACTGA
AAAGGTCAAAAGGTCA----
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTCAGAAGDGCACTGA--
------RGGGCACTAACY
 A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTCAGAAGDGCACTGA
GGCAAAAGTCCAATAA
 A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTCAGAAGDGCACTGA
GAGGTCAAAAGGTCA----
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTCAGAAGDGCACTGA
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GTCAGAAGDGCACTGA
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GTCAGAAGDGCACTGA-
-------AASCACTCAA
 A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GTCAGAAGDGCACTGA-
-------AAGCACTTAA
 A C T G A G C T A G T C G T C A C T A G C T G A C G T A A C T G C G T A A T C G A T G C G C T A G T A C A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A