Information for 3-AGCTGGCACYCCCAGG (Motif 11)

T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C A G C T A C T G A C T G A T C G C T G A A T C G A G C T A T C G A T G C A G T C C T G A A T C G A T G C A G C T
p-value:1e-9
log p-value:-2.295e+01
Information Content per bp:1.793
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.4 +/- 24.4bp
Average Position of motif in Background53.4 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG
GGTTGGCAT-------
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG
---GGCCACRCCCMK-
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
A C G T A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG
-NTTGGCANN------
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGCTGGCACYCCCAGG
----GCCACACCCA--
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG
-CTTGGCAA-------
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGCTGGCACYCCCAGG-----
------CCCCCCCGGGGGGGT
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGCTGGCACYCCCAGG
VGCTGWCAVB------
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:forward strand
Alignment:AGCTGGCACYCCCAGG---
-------GTCCCCAGGGGA
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG
----GCCMCRCCCH--
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G
A C G T A C G T A C G T A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T A C G T A C G T

ELF4/MA0641.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGCTGGCACYCCCAGG--
------CACTTCCGGGTT
 T C G A A T C G A T G C A G C T A C T G A T C G A T G C C T G A A T G C A G C T A T G C A G T C A G T C C T G A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C T C G A A G T C C A G T G A C T G T A C A G T C A C T G A T C G C A T G C G A T G C A T