Information for 7-TTGCCAGCAG (Motif 11)

A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A T G C A C G T A C T G T C A G A T G C T C G A T C G A
p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.849
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif185.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets44.1 +/- 27.0bp
Average Position of motif in Background50.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCAG
CTGCCCGCA-
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCAG
TTGCCAAG--
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTGCCAGCAG---
--GTCAGCANNTN
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAGCAG
TGAGTCAGCA-
 A C G T A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTGCCAGCAG---
-NGTCAGCANTTT
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTGCCAGCAG
CGTGCCAAG--
 A C G T A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCAG
TTGACAGC--
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTGCCAGCAG----
--CACAGCAGGGGG
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCAGCAG----
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTGCCAGCAG--
----CAGCTGNT
 A G C T A G C T A T C G A G T C A G T C G T C A A T C G A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T