Information for 8-TTGCCARGGC (Motif 3)

C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
Reverse Opposite:
C A T G T G A C A G T C G A T C C G A T C T A G A T C G G T A C G T C A G T C A
p-value:1e-16
log p-value:-3.806e+01
Information Content per bp:1.674
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif11.91%
Number of Background Sequences with motif2173.8
Percentage of Background Sequences with motif4.64%
Average Position of motif in Targets44.2 +/- 25.5bp
Average Position of motif in Background49.3 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTGCCARGGC
TTGCCAAG--
 C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCARGGC---
GTTGCCATGGNAAC
 A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCARGGC
CTGTTGCTAGGS-
 A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTGCCARGGC--
NGTTGCCATGGCAA
 A C G T A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTGCCARGGC
CGTGCCAAG--
 A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTGCCARGGC----
ATGCCCGGGCATGT
 C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C A C G T A C G T A C G T A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTGCCARGGC-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGCCARGGC
GGTGCCAAGT-
 A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTGCCARGGC--
GGTTGCCATGGCAA
 A C G T A C G T C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTGCCARGGC
-TGCCAA---
 C A G T C A G T A C T G A T G C A G T C G C T A C T A G C T A G A C T G G T A C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T