Information for 9-TAACATGTAT (Motif 29)

A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T
Reverse Opposite:
C T G A A G C T G T C A A G T C C G T A A C G T A C T G G A C T A C G T C T G A
p-value:1e-6
log p-value:-1.431e+01
Information Content per bp:1.862
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets70.0 +/- 24.1bp
Average Position of motif in Background46.0 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
NNTTTTACATGTANNNT
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
ANTNNTACATGTANNTN
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
ANTATTACATGTANNNN
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
NNTATTACATGTANNNT
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:6
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TAACATGTAT---
ANTTNTACATGTANTTN
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAACATGTAT--
NNTNTCATGAATGT
 A C G T A C G T A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TAACATGTAT----
---AATGTATCAAT
 A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TAACATGTAT-
-AACACGTGTT
 A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T A C G T
A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TAACATGTAT
AACCTTATAT
 A G C T C G T A C G T A A G T C C G T A A C G T A C T G A C G T C T G A A G C T
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T