Information for 5-GAAGGCAGCCAGGCTC (Motif 9)

C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
Reverse Opposite:
A T C G G T C A A C T G A T G C A T G C G C A T C T A G A T C G A T G C C G A T C T A G A G T C G T A C A C G T A G C T G A T C
p-value:1e-11
log p-value:-2.694e+01
Information Content per bp:1.689
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif56.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets55.4 +/- 25.1bp
Average Position of motif in Background44.9 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAAGGCAGCCAGGCTC
AGCGGCACACACGCAA
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAAGGCAGCCAGGCTC
-AAGGCAAGTGT----
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAAGGCAGCCAGGCTC
--TGGCAGNCTGCCAG
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGGCTC---
----SCAGYCADGCATGAC
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAAGGCAGCCAGGCTC
--AGCCACTCAAG---
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGGCTC
GGTTGGCAT--------
 A C G T C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGGCTC
AGGTGNCAGACAG----
 A C G T C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGGCTC
----BCAGACWA----
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGGCTC
----CCAGACRSVB--
 C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGGCTC
TNNGGGCAG--------
 A C G T C A T G C T G A T G C A A C T G A C T G A G T C C G T A T A C G A T G C A G T C C G T A A T C G T A C G T G A C C A G T A T G C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T