Information for 23-ACTGGATACCAAG (Motif 39)

C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C G T A G T C A G T C C G T A A C T G A C G T
p-value:1e-3
log p-value:-8.863e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 21.0bp
Average Position of motif in Background60.1 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACTGGATACCAAG
TACCCTAGTTACCGA-
 A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------ACTGGATACCAAG---
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACTGGATACCAAG-
CTACTTGGATACGGAAT
 A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ACTGGATACCAAG-
----GGTGCCAAGT
 C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACTGGATACCAAG-
ATTTGCATACAATGG
 A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:ACTGGATACCAAG
---RCATTCCWGG
 C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

PB0036.1_Irf6_1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--ACTGGATACCAAG--
CTGATCGAAACCAAAGT
 A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----ACTGGATACCAAG
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0105.1_Arid3a_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--ACTGGATACCAAG
NNATNTGATANNNNN
 A C G T A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-ACTGGATACCAAG---
AATAGGGTATCAATATT
 A C G T C G T A A G T C A C G T A C T G A C T G C G T A A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T