Motif 13

Information for 6-CGTTACGAAC (Motif 13)

Reverse Opposite:

p-value:	1e-10
log p-value:	-2.521e+01
Information Content per bp:	1.879
Number of Target Sequences with motif	5.0
Percentage of Target Sequences with motif	0.74%
Number of Background Sequences with motif	1.3
Percentage of Background Sequences with motif	0.00%
Average Position of motif in Targets	44.3 +/- 27.9bp
Average Position of motif in Background	70.0 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)	1.0
Multiplicity (# of sites on avg that occur together)	1.20
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Atf1/MA0604.1/Jaspar

Match Rank:	1
Score:	0.59
Offset:	1
Orientation:	forward strand
Alignment:	CGTTACGAAC -ATGACGTA-

HOXC12/MA0906.1/Jaspar

Match Rank:	2
Score:	0.56
Offset:	-1
Orientation:	reverse strand
Alignment:	-CGTTACGAAC NTTTTACGACC

HOXC11/MA0651.1/Jaspar

Match Rank:	3
Score:	0.56
Offset:	-1
Orientation:	reverse strand
Alignment:	-CGTTACGAAC NTTTTACGACC

GMEB2/MA0862.1/Jaspar

Match Rank:	4
Score:	0.56
Offset:	2
Orientation:	reverse strand
Alignment:	CGTTACGAAC --TTACGTAA

Hoxa11/MA0911.1/Jaspar

Match Rank:	5
Score:	0.56
Offset:	-2
Orientation:	reverse strand
Alignment:	--CGTTACGAAC ANTTTTACGACC

PH0067.1_Hoxc12/Jaspar

Match Rank:	6
Score:	0.55
Offset:	-4
Orientation:	reverse strand
Alignment:	----CGTTACGAAC--- GNNNTTTTACGACCTNA

Gmeb1/MA0615.1/Jaspar

Match Rank:	7
Score:	0.55
Offset:	-2
Orientation:	forward strand
Alignment:	--CGTTACGAAC----- GAGTGTACGTAAGATGG

PB0027.1_Gmeb1_1/Jaspar

Match Rank:	8
Score:	0.55
Offset:	-2
Orientation:	forward strand
Alignment:	--CGTTACGAAC----- GAGTGTACGTAAGATGG

HOXD12/MA0873.1/Jaspar

Match Rank:	9
Score:	0.54
Offset:	-1
Orientation:	reverse strand
Alignment:	-CGTTACGAAC NTTTTACGACT

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:	10
Score:	0.54
Offset:	-2
Orientation:	forward strand
Alignment:	--CGTTACGAAC--- ACCGTGACTAATTNN