Information for 11-GGAACATTGGCCCAGG (Motif 21)

A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G C T A G A C T G A G T C A G T C C G T A G C T A A C G T A C T G A C G T A C G T A G T C A G T C
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 12.0bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
-GAACAATGGN-----
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
-GAACAATGG------
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
VRAACAATGG------
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGAACATTGGCCCAGG
-RAACAATGGN-----
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG--
--------TGCCCAGNHW
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
--AACAAAGG------
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
AAAACAATGG------
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
--CCGATTGGCT----
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
GGAACAAAGR------
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGAACATTGGCCCAGG
---TGATTGGCTANN-
 A C T G T C A G G T C A C G T A A G T C C G T A C A G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T