Information for 8-TGGGCTTTTTGCC (Motif 20)

A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C
Reverse Opposite:
A C T G C T A G A T G C C G T A C G T A C G T A C G T A C T G A A C T G A G T C A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.839e+01
Information Content per bp:1.936
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets26.8 +/- 21.1bp
Average Position of motif in Background38.8 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGGGCTTTTTGCC-
TTGGCATGGTGCCA
 A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGGGCTTTTTGCC
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTTTTTGCC--
CTTGGCANNNTGCCAA
 A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGGGCTTTTTGCC--
TGGACTTTGNNCTCN
 A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGGCTTTTTGCC-
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGGCTTTTTGCC---
TGGACTTTGNNCTNTG
 A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGGCTTTTTGCC
CCTTGCAATTTTTNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T

Rarg/MA0859.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCTTTTTGCC--
TTGACCTTTTGACCTT
 A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGGGCTTTTTGCC--
-TGGCAGNCTGCCAG
 A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C A C G T A C G T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGGGCTTTTTGCC
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C A G C T A C G T A C G T C G A T A C G T A T C G A G T C A G T C
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C