Information for 2-TGGCAATGCA (Motif 12)

A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
Reverse Opposite:
C G A T A C T G A G T C G T C A A G C T A C G T A T C G T G A C A G T C T C G A
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.835
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif294.5
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets40.7 +/- 27.1bp
Average Position of motif in Background51.3 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGGCAATGCA-----
AATCGCACTGCATTCCG
 A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAATGCA
CTTGGCAA----
 A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGCAATGCA---
-GGGATTGCATNN
 A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A A C G T A C G T A C G T
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGCAATGCA
-GACAATGNN
 A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAATGCA
NTTGGCANN---
 A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAATGCA
NNTTGGCANN---
 A C G T A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCAATGCA
TTGGCA-----
 A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:-10
Orientation:reverse strand
Alignment:----------TGGCAATGCA
TGGCCANNNNNGGAACTGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAATGCA
GGTTGGCAT----
 A C G T A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAATGCA
RHTGWCAR----
 A C G T A C G T A G C T A C T G A C T G A T G C G T C A C T G A C A G T A C T G G T A C G C T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T