Information for 7-CAGCAGAGCTWGTGAD (Motif 11)

T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
Reverse Opposite:
G C A T A C G T A T G C G T C A A G T C G C T A G C T A T C A G G T A C A C G T A T G C C G A T A C T G A T G C A C G T A C T G
p-value:1e-9
log p-value:-2.248e+01
Information Content per bp:1.699
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif78.7
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets47.8 +/- 21.0bp
Average Position of motif in Background53.8 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGCAGAGCTWGTGAD
--TCAGNGAGCGTGAC
 T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
A C G T A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CAGCAGAGCTWGTGAD
----AGAGGAAGTG--
 T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
A C G T A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CAGCAGAGCTWGTGAD
--GCAGTGATTT----
 T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGAGCTWGTGAD
CACAGCAGGGGG------
 A C G T A C G T T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGAGCTWGTGAD
CGCAGCTGCG--------
 A C G T A C G T T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGAGCTWGTGAD
HCAGCTGDTN-------
 A C G T T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGAGCTWGTGAD
ANCAGCTG----------
 A C G T A C G T T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGCAGAGCTWGTGAD
CCACACAGCAGGAGA-
 T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGCAGAGCTWGTGAD
GAGCACAGCAGGACA-
 T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGAGCTWGTGAD
GTCAGCANNTN-------
 A C G T A C G T T A G C G T C A A T C G A G T C C G T A A T C G G T C A A C T G A G T C C G A T C G A T T A C G A C G T T A C G G T C A C G T A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T