Information for 1-AGCCCAGCAA (Motif 10)

T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A
Reverse Opposite:
C A G T A C G T C T A G A T G C G C A T T C A G C T A G T C A G T A G C A C G T
p-value:1e-9
log p-value:-2.262e+01
Information Content per bp:1.665
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif9.11%
Number of Background Sequences with motif1493.3
Percentage of Background Sequences with motif3.19%
Average Position of motif in Targets42.8 +/- 27.3bp
Average Position of motif in Background49.4 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGCCCAGCAA
TGCCCAGNHW
 T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCCCAGCAA---
-SCCTAGCAACAG
 T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCCCAGCAA--
TGTTKCCTAGCAACM
 A C G T A C G T A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGCAA----
CCGCATAGCAACGGA
 A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGCAA----
CCACACAGCAGGAGA
 A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGCAA----
TACCATAGCAACGGT
 A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGCAA----
GAGCACAGCAGGACA
 A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGCAA----
CCACACAGCAGGAGA
 A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGCCCAGCAA----
--CACAGCAGGGGG
 T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGCCCAGCAA---
CTGAGTCAGCAATTT
 A C G T A C G T T G C A A T C G A G T C G A T C A G T C C G T A T A C G G A T C T G C A G T C A A C G T A C G T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T