Information for 24-TTATAATACATCA (Motif 28)

A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C T G C G A T G T C A A C G T A C G T C G T A A C G T C G T A C G T A
p-value:1e-6
log p-value:-1.538e+01
Information Content per bp:1.951
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 26.0bp
Average Position of motif in Background44.5 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTATAATACATCA
NNNTTTNTAATACNG--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TTATAATACATCA
TAAGATTATAATACGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTATAATACATCA
NANTATTATAATTNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TTATAATACATCA
TTTAATTATAATTAAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTATAATACATCA-
--GYCATCMATCAT
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTATAATACATCA
NNTAATTATAATTNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTATAATACATCA-------
---TCACCCATCAATAAACA
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTATAATACATCA-
----ATTGCATCAT
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTATAATACATCA-
----ATTGCATCAK
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

JUN/MA0488.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TTATAATACATCA----
----ATGACATCATCNN
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T