Information for 12-GCTTCATTGC (Motif 20)

A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C
Reverse Opposite:
C T A G T A G C G C T A C T G A C A G T T C A G G T C A C G T A A T C G T G A C
p-value:1e-8
log p-value:-2.066e+01
Information Content per bp:1.536
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif245.1
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets50.8 +/- 28.6bp
Average Position of motif in Background48.4 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCTTCATTGC----
TTTATTAATTGCNNGN
 A C G T A C G T A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTTCATTGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTTCATTGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCTTCATTGC-
--CTCATTGTC
 A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTTCATTGC----
NNCATTCATTCATNNN
 A C G T A C G T A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCTTCATTGC
-TTTTATTGC
 A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTTCATTGC
--TTGATTGN
 A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PB0005.1_Bbx_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTTCATTGC----
NANTTCATTGAATTA
 A C G T A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTTCATTGC-
NTTTTATTACN
 A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTTCATTGC
TTTTTATTGC
 A C T G T A G C G C A T C A G T A G T C G T C A G A C T C G A T A T C G G A T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C