Information for 5-GAVATTCAAAGGCCAT (Motif 9)

A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A C G A T A C T G C T A G A G T C A G T C A C G T A G C T A C G T C T A G C T G A C G T A C G A T A C T G C G A T A G T C
p-value:1e-11
log p-value:-2.675e+01
Information Content per bp:1.812
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.7 +/- 24.5bp
Average Position of motif in Background40.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA(var.2)/MA0730.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAVATTCAAAGGCCAT
AGGTCATGCAAAGGTCA-
 A C G T A C G T A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT
------CAAAGGTCAG
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAVATTCAAAGGCCAT
AGGTCAACTAAAGGTCA-
 A C G T A C G T A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT
-----NTCAAGGTCA-
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT---
---TCTCAAAGGTCACGAG
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT-
--AAGTTCAAGGTCAGC
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT
-----TTCAAGGTCAT
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT---
---TCTCAAAGGTCACCTG
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT
-----BTCAAGGTCA-
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GAVATTCAAAGGCCAT-
-------CAAGGHCANV
 A C T G C G T A T A G C C G T A A C G T A G C T G A T C G T C A C T G A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G