Information for 1-CAATCRACCA (Motif 12)

A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C G A T A G T C A C T G C G T A A C G T A C G T A C T G
p-value:1e-9
log p-value:-2.121e+01
Information Content per bp:1.904
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets66.1 +/- 24.2bp
Average Position of motif in Background54.8 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATCRACCA
CCAATCAA---
 A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAATCRACCA--
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAATCRACCA--
CCATCAATCAAA
 A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAATCRACCA-
SSAATCCACANN
 A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAATCRACCA---
AACAAACAACAAGAG
 A C G T A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T A C G T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAATCRACCA-
GYCATCMATCAT
 A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAATCRACCA
TCCAATCCACA-
 A C G T A C G T A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAATCRACCA-----
---GCGACCACCGAA
 A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAATCRACCA
TCATCAATCA
 A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

GLI2/MA0734.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAATCRACCA-----
---GCGACCACACTG
 A G T C C G T A C G T A C G A T A G T C C T A G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G