Information for 13-CARGGGATTC (Motif 21)

A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A G T C A C G A T A T G C A G T C A G T C A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.576e+01
Information Content per bp:1.873
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif38.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets61.7 +/- 20.9bp
Average Position of motif in Background50.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB1/MA0105.4/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CARGGGATTC----
-AGGGGAATCCCCT
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CARGGGATTC----
--GGGGATTCCCCC
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CARGGGATTC----
-AGGGGATTCCCCT
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CARGGGATTC-----
TTAAGGGGATTAACTAC
 A C G T A C G T A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CARGGGATTC-----
TTAGAGGGATTAACAAT
 A C G T A C G T A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CARGGGATTC
--NGGGATTA
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

EBF1/MA0154.3/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CARGGGATTC
ANTCCCTNGGGAAT-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CARGGGATTC------
AGAGGGGATTAATTTAT
 A C G T A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CARGGGATTC-
-GGGGATTTCC
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CARGGGATTC-
AAGAGGATTAG
 A G T C G T C A C T A G A C T G A C T G A T C G C G T A A C G T A C G T A G T C A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G