Information for 9-MCACASKWMCMTGWCC (Motif 22)

G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G C G A T A G T C C G T A A C T G A C T G C A T G C G A T G T A C A T C G A C G T A C T G A C G T A C T G C A G T
p-value:1e-6
log p-value:-1.541e+01
Information Content per bp:1.827
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 21.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.57
Offset:11
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-
-----------TGACCT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC---
-----------TGACCTYA
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:MCACASKWMCMTGWCC
GCAGCCAAGCGTGACN
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-
-----TGACCTTGACCT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.54
Offset:11
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC---
-----------TGACCYCT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-
---NAGGTCANTGACCT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-------
-------NNNNTGACCCGGCGCG
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----MCACASKWMCMTGWCC
NWAACCACADNN--------
 A C G T A C G T A C G T A C G T G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.52
Offset:11
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-----
-----------TGACCTTGAT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:MCACASKWMCMTGWCC-
-----TGACCTTGACCT
 G T A C A G T C C G T A A G T C C G T A A T G C A C T G C G T A G T A C A G T C G T A C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T