Information for 13-KGATCAGGACCAG (Motif 27)

A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
Reverse Opposite:
A G T C A C G T A C T G C T A G G A C T A G T C A G T C A C G T A C T G C G T A A C G T A G T C G T C A
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.837
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.5 +/- 29.4bp
Average Position of motif in Background39.5 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:KGATCAGGACCAG
AGGTCAAGGTCA-
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KGATCAGGACCAG-
AAGTTCAAGGTCAGC
 A C G T A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---KGATCAGGACCAG----
YCAGGCWCAGTACCAGGCTC
 A C G T A C G T A C G T A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:KGATCAGGACCAG
AGGTCAAGGTCA-
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:KGATCAGGACCAG
---CCAGGAACAG
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-KGATCAGGACCAG
NGGATTAN------
 A C G T A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:KGATCAGGACCAG-----
----CAGGCCNNGGCCNN
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KGATCAGGACCAG
--NTCAAGGTCA-
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KGATCAGGACCAG
--BTCAAGGTCA-
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:KGATCAGGACCAG-----
RGGTCADNNAGAGGTCAV
 A C G T C T A G T C G A A C G T A G T C C G T A A C T G A C T G C G T A G A T C A G T C G T C A A C T G A C G T A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C