Information for 4-AAATGCCAAA (Motif 22)

C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
Reverse Opposite:
G A C T A C G T A C G T C T A G A T C G T A G C G T C A C A G T A G C T C G A T
p-value:1e-9
log p-value:-2.074e+01
Information Content per bp:1.823
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.39%
Number of Background Sequences with motif335.2
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets52.4 +/- 25.7bp
Average Position of motif in Background49.2 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AAATGCCAAA-
-GGTGCCAAGT
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AAATGCCAAA
-CGTGCCAAG
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:AAATGCCAAA
---TGCCAA-
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AAATGCCAAA-
--ATGCCAACC
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AAATGCCAAA
--TTGCCAAG
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAATGCCAAA-
--ATGCCCACC
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A A C G T
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAATGCCAAA
CCAACTGCCA--
 A C G T A C G T C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAATGCCAAA-----
ACTATGCCAACCTACC
 A C G T C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATGCCAAA---
ATATGCAAATNNN
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAATGCCAAA
ATATGCAAAT
 C G T A T C G A G T C A A C G T A T C G T A G C A G T C C G T A G T C A C T G A
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T