Information for 10-GAGAAAGGARAGAGCM (Motif 14)

A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
Reverse Opposite:
A C G T A T C G T A G C A C G T T A G C A C G T A G T C A C G T A G T C G T A C A C G T A C G T A G C T A G T C A G C T A G T C
p-value:1e-11
log p-value:-2.547e+01
Information Content per bp:1.745
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif18.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.7 +/- 28.4bp
Average Position of motif in Background47.1 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGAAAGGARAGAGCM
GGAGAAAGGTGCGA---
 A C G T A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GAGAAAGGARAGAGCM
AAACAGACAAAGGAAT-----
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGAAAGGARAGAGCM
-AGAAACGAAAGT---
 A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAAGGARAGAGCM
AAAACAAAGG--------
 A C G T A C G T A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGAAAGGARAGAGCM
RACAAWGG--------
 A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGAAAGGARAGAGCM
AACAAAGG--------
 A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGAAAGGARAGAGCM
GAGAACCGAAACTG--
 A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GAGAAAGGARAGAGCM
GAAAGTGAAAGT--------
 A C G T A C G T A C G T A C G T A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGAAAGGARAGAGCM
GGAAGGAAGGAAGGAAGG
 A C G T A C G T A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGAAAGGARAGAGCM
--NDCAGGAARTNN--
 A C T G C T G A C T A G C T G A C G T A C G T A A C T G C T A G C G T A T C A G T C G A A C T G C G T A A C T G A T G C T G C A
A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T