Information for 1-GRACAYNNTGTHCTBB (Motif 1)

C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
Reverse Opposite:
T G C A T G C A C T G A T C A G C T G A C G T A A G T C C G T A A T G C G C T A T C A G C G A T A T C G A G C T A G C T G A T C
p-value:1e-135
log p-value:-3.124e+02
Information Content per bp:1.538
Number of Target Sequences with motif206.0
Percentage of Target Sequences with motif27.07%
Number of Background Sequences with motif1252.9
Percentage of Background Sequences with motif2.79%
Average Position of motif in Targets53.7 +/- 20.1bp
Average Position of motif in Background52.1 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GRACAYNNTGTHCTBB
GVACAGNMTGTYCTB-
 C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GRACAYNNTGTHCTBB
GRACAGWMTGTYCTB-
 C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GRACAYNNTGTHCTBB
AGNACAGNCTGTTCTN-
 A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GRACAYNNTGTHCTBB
AGNACANNNTGTNCTN-
 A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GRACAYNNTGTHCTBB
GAACADWATGTTCTT-
 C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:6
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GRACAYNNTGTHCTBB
GGGAACATTGTGTTCCC-
 A C G T A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C A C G T

NR3C1/MA0113.3/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GRACAYNNTGTHCTBB
NGGAACATNATGTACCC-
 A C G T A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C A C G T

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GRACAYNNTGTHCTBB
GGGAACACGGTGTACCC-
 A C G T A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GRACAYNNTGTHCTBB
TGAACCCGATGACCC--
 A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GRACAYNNTGTHCTBB
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T C T A G T C G A C T G A A T G C G C T A A G T C C G A T T A C G G C A T C T A G G C A T G A C T A G T C G A C T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T