p-value: | 1e-11 |
log p-value: | -2.710e+01 |
Information Content per bp: | 1.875 |
Number of Target Sequences with motif | 6.0 |
Percentage of Target Sequences with motif | 0.80% |
Number of Background Sequences with motif | 2.7 |
Percentage of Background Sequences with motif | 0.01% |
Average Position of motif in Targets | 58.3 +/- 21.5bp |
Average Position of motif in Background | 42.0 +/- 12.2bp |
Strand Bias (log2 ratio + to - strand density) | 2.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 1 |
Score: | 0.72 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | SYTGGCAGATMCW CTTGGCAA----- |
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NFIC/MA0161.1/Jaspar
Match Rank: | 2 |
Score: | 0.68 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | SYTGGCAGATMCW -TTGGCA------ |
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NFIX/MA0671.1/Jaspar
Match Rank: | 3 |
Score: | 0.67 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | SYTGGCAGATMCW NTTGGCANN---- |
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NFIA/MA0670.1/Jaspar
Match Rank: | 4 |
Score: | 0.67 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -SYTGGCAGATMCW NNTTGGCANN---- |
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Hic1/MA0739.1/Jaspar
Match Rank: | 5 |
Score: | 0.64 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -SYTGGCAGATMCW GGTTGGCAT----- |
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Myb/MA0100.2/Jaspar
Match Rank: | 6 |
Score: | 0.64 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | SYTGGCAGATMCW --TGGCAGTTGN- |
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PH0102.1_Meis1/Jaspar
Match Rank: | 7 |
Score: | 0.60 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --SYTGGCAGATMCW- NTATTGACAGCTNNTT |
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Hand1::Tcf3/MA0092.1/Jaspar
Match Rank: | 8 |
Score: | 0.60 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | SYTGGCAGATMCW -ATGCCAGACN-- |
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PH0104.1_Meis2/Jaspar
Match Rank: | 9 |
Score: | 0.60 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --SYTGGCAGATMCW- NTATTGACAGGTNNTN |
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PH0170.1_Tgif2/Jaspar
Match Rank: | 10 |
Score: | 0.60 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --SYTGGCAGATMCW- GTATTGACAGCTNNTT |
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