Information for 4-HKTTTATTGG (Motif 3)

G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G
Reverse Opposite:
A G T C G T A C G T C A C G T A A C G T C G T A C G T A G C T A G T A C C G A T
p-value:1e-25
log p-value:-5.868e+01
Information Content per bp:1.711
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif12.10%
Number of Background Sequences with motif409.2
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets49.1 +/- 27.9bp
Average Position of motif in Background51.4 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:HKTTTATTGG
TTTTTATTGG
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:HKTTTATTGG
NTTTTATTGG
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---HKTTTATTGG---
NNAATTTTATTGGNTN
 A C G T A C G T A C G T G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:HKTTTATTGG
NTTTTATTGG
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---HKTTTATTGG---
NNANTTTTATTGGNNN
 A C G T A C G T A C G T G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:HKTTTATTGG-
-TTTTATTRGN
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.86
Offset:1
Orientation:forward strand
Alignment:HKTTTATTGG-
-TTTTATKRGG
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:HKTTTATTGG
-TTTTATTGC
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----HKTTTATTGG---
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:HKTTTATTGG-
-TTTAATTGCN
 G C T A C A T G C G A T A C G T C G A T G T C A G C A T A C G T C A T G T C A G A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C