Information for 9-AAGARNGACA (Motif 12)

T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A
Reverse Opposite:
C G A T T C A G C A G T A G T C G A C T G A C T G A C T T A G C A G C T A G C T
p-value:1e-12
log p-value:-2.924e+01
Information Content per bp:1.601
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif6.11%
Number of Background Sequences with motif734.8
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets51.7 +/- 24.5bp
Average Position of motif in Background50.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGARNGACA---
CAAACAACAACACCT
 A C G T A C G T T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAGARNGACA-
----TTGACAG
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGARNGACA-------
GATATTGACAGCTGCGT
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AAGARNGACA--
----TTGACAGG
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGARNGACA
AAYTAGGTCA
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGARNGACA--
NTGATTGACAGN
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAGARNGACA-
---RHTGWCAR
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGARNGACA--
-AGGGTAACAGC
 T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AAGARNGACA--
TGCCAAAATAAACANN
 A C G T A C G T A C G T A C G T T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGARNGACA----
GGGRAARRGRMCAGMTG
 A C G T A C G T A C G T T C G A C T G A A T C G C T G A C T G A C T G A T C A G G T C A A G T C G C T A A C G T A C G T A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G