Information for 9-CTGGCAGWTC (Motif 5)

A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
Reverse Opposite:
A T C G G T C A G C A T A T G C C G A T A C T G A T G C G T A C G C T A T C A G
p-value:1e-18
log p-value:-4.220e+01
Information Content per bp:1.590
Number of Target Sequences with motif143.0
Percentage of Target Sequences with motif19.86%
Number of Background Sequences with motif4106.0
Percentage of Background Sequences with motif9.05%
Average Position of motif in Targets47.8 +/- 26.9bp
Average Position of motif in Background50.6 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGWTC
CTTGGCAA---
 A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGWTC
NTTGGCANN--
 A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTGGCAGWTC
TTGGCA----
 A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGWTC
NNTTGGCANN--
 A C G T A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGWTC
GGTTGGCAT---
 A C G T A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGWTC
TNNGGGCAG---
 A C G T A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGWTC
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTGGCAGWTC-
-TGGCAGTTGN
 A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C A C G T
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGWTC
ARNTGACA----
 A C G T A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGWTC
VBTGWCAGCB-
 A C G T A G T C C G A T A C T G T A C G T G A C C G T A T A C G C G T A C A G T T A G C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T