Information for 20-GCCAGTAACA (Motif 33)

A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T C G T A A G T C A C G T C T A G A C T G A T G C
p-value:1e-6
log p-value:-1.439e+01
Information Content per bp:1.924
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif29.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets45.7 +/- 19.7bp
Average Position of motif in Background41.7 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCAGTAACA-
SCCTAGCAACAG
 A C G T A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCCAGTAACA-
-CCAATAAAAC
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCAGTAACA----
AACCCAATAAAATTCG
 A C G T A C G T A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCAGTAACA
GGCCATTAAC-
 A C G T A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCAGTAACA-
-CCAGGAACAG
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCAGTAACA-----
AAAAATAACAAACGG
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCCAGTAACA-
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCCAGTAACA
CCYMATAAAA
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCAGTAACA-
-CCAATAAAAA
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCAGTAACA-
-CCAATAAAAA
 A T C G A G T C A G T C C G T A A C T G A C G T C G T A C G T A G T A C C G T A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A