Information for 17-ATGCAGGCTTGAA (Motif 27)

C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A A G C T
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.946
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.2 +/- 28.7bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGCAGGCTTGAA
AANTCATGCGTGAA
 A C G T C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGCAGGCTTGAA
NNNNATGCGGGTNNNN-
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ATGCAGGCTTGAA
---CAAGCTT---
 C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAGGCTTGAA
SCAGYCADGCATGAC
 A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

GCM2/MA0767.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATGCAGGCTTGAA
TATGCGGGTA----
 A C G T C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATGCAGGCTTGAA-
GCAGCCAAGCGTGACN
 A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ATGCAGGCTTGAA
--CNAGGCCT---
 C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ATGCAGGCTTGAA-
----AGGTGTGAAA
 C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

TBX15/MA0803.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ATGCAGGCTTGAA
----AGGTGTGA-
 C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A C G T A C G T A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:ATGCAGGCTTGAA
---CWGGCGGGAA
 C T G A A C G T A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C G T C T A G C G T A G T C A
A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A