Information for 8-CTGGCAAGGGCAR (Motif 8)

A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G T C A G T C T G A C A G C T A C G T A C T G A T G C A G T C C G T A C T A G
p-value:1e-10
log p-value:-2.488e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.9 +/- 33.0bp
Average Position of motif in Background47.1 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAAGGGCAR
CTTGGCAA------
 A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAAGGGCAR
NTTGGCANN-----
 A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CTGGCAAGGGCAR-
----CAAGGHCANV
 A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGCAAGGGCAR
TTGGCA-------
 A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGGCAAGGGCAR
--BTCAAGGTCA-
 A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAAGGGCAR
NNTTGGCANN-----
 A C G T A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAAGGGCAR
GCTGTCAA------
 A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAAGGGCAR
VGCTGWCAVB-----
 A C G T A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGGCAAGGGCAR
--NTCAAGGTCA-
 A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAAGGGCAR
RHTGWCAR------
 A C G T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C T G C T A G A C T G G T A C C G T A C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T