Information for 5-GGAASRMAGCCTG (Motif 5)

A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G A G T C A C G T A C T G G A T C A T G C A G C T A C G T A T G C A G T C
p-value:1e-13
log p-value:-3.128e+01
Information Content per bp:1.885
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 33.9bp
Average Position of motif in Background39.4 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGAASRMAGCCTG
TGGCAGNCTGCCAG
 A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGAASRMAGCCTG-
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAASRMAGCCTG
GGAACAAAGR---
 A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGAASRMAGCCTG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGAASRMAGCCTG
------CAGCC--
 A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGAASRMAGCCTG---
-GAGCACAGCAGGACA
 A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GGAASRMAGCCTG
------AAGCTTG
 A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAASRMAGCCTG
ACCGGAAG--------
 A C G T A C G T A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAASRMAGCCTG
AGAGGAA---------
 A C G T A C G T A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:10
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------GGAASRMAGCCTG
NNNNGGGGGAAGANGG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A C T G A A T C G C T A G G T A C C G T A A C T G A G T C A G T C A C G T A C T G
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T A C G T