Information for 4-TTTTSCCAATAAA (Motif 4)

G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A
Reverse Opposite:
C G A T A C G T C G A T T G C A A G C T C G A T A C T G C T A G T A C G G T C A T G C A G T C A C G T A
p-value:1e-14
log p-value:-3.238e+01
Information Content per bp:1.693
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif341.6
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets43.1 +/- 29.9bp
Average Position of motif in Background52.1 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.80
Offset:5
Orientation:forward strand
Alignment:TTTTSCCAATAAA--
-----CCAATAAAAC
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.78
Offset:5
Orientation:forward strand
Alignment:TTTTSCCAATAAA--
-----CCAATAAAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:TTTTSCCAATAAA-
----CCYMATAAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.75
Offset:5
Orientation:forward strand
Alignment:TTTTSCCAATAAA--
-----CCAATAAAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TTTTSCCAATAAA-----
--AACCCAATAAAATTCG
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TTTTSCCAATAAA-----
--CTACCAATAAAATTCT
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.72
Offset:4
Orientation:forward strand
Alignment:TTTTSCCAATAAA-
----NCYAATAAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.68
Offset:4
Orientation:forward strand
Alignment:TTTTSCCAATAAA-
----NGCAATTAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.68
Offset:5
Orientation:forward strand
Alignment:TTTTSCCAATAAA-
-----GCAATAAAA
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTTTSCCAATAAA------
--AATGCAATAAAATTTAT
 G A C T C A G T A C G T C A G T A T G C G A T C G T A C C G T A C T G A A C G T C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T