Information for 12-CTGGCCAGCC (Motif 17)

A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C
Reverse Opposite:
C T A G T A C G A T G C C G A T A C T G A C T G A T G C A G T C C T G A C T A G
p-value:1e-8
log p-value:-1.953e+01
Information Content per bp:1.843
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif103.9
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets62.4 +/- 22.8bp
Average Position of motif in Background45.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGGCCAGCC-
-TGCCCAGNHW
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGGCCAGCC--
----BCAGACWA
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTGGCCAGCC
-----CAGCC
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGGCCAGCC--
----CCAGACAG
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCCAGCC--
TCCCAGMCRAGCCCC
 A C G T A C G T A C G T A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGGCCAGCC
---CACAGN-
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTGGCCAGCC
--TGCCAA--
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGGCCAGCC
CGTGCCAAG-
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTGGCCAGCC----
----CCAGACRSVB
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SP2/MA0516.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTGGCCAGCC-------
--GCCCCGCCCCCTCCC
 A G T C A G C T C T A G A T C G G T A C A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C