Information for 8-AAGCRAGCCA (Motif 10)

T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G C T G A C T C T A G A G T C G A C T A C G T
p-value:1e-10
log p-value:-2.359e+01
Information Content per bp:1.778
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif345.0
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets54.5 +/- 27.5bp
Average Position of motif in Background50.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGCRAGCCA
-AGCGCGCC-
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAGCRAGCCA--
---CGTGCCAAG
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AAGCRAGCCA-
-----TGCCAA
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGCRAGCCA
AAYTAGGTCA
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAGCRAGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGCRAGCCA-----
AGGGAAGTCATTTCT
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAGCRAGCCA-
---BCAGACWA
 T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGCRAGCCA-
TGGCACCATGCCAA
 A C G T A C G T A C G T T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGCRAGCCA-----
CAAATCCAGACATCACA
 A C G T A C G T T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGCRAGCCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T T G C A C T G A A C T G G A T C C T G A C T G A A C T G T G A C A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A