Information for 25-TTWCAAGTGTCAACAA (Motif 42)

A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A
Reverse Opposite:
A C G T C A G T C A T G C G A T A C G T C A T G G T C A G T A C C G T A G A T C C G A T C G A T A C T G C G T A C G T A G T C A
p-value:1e-7
log p-value:-1.623e+01
Information Content per bp:1.714
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets63.2 +/- 16.6bp
Average Position of motif in Background44.1 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTWCAAGTGTCAACAA
NANTTTCAAGTGGTTAN--
 A C G T A C G T A C G T A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTWCAAGTGTCAACAA----
---AAAATGTAAACAAACAG
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTWCAAGTGTCAACAA----
---AAAATGTAAACAAACAG
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0019.1_Foxl1_1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTWCAAGTGTCAACAA----
---TAAATGTAAACAAAGGT
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTWCAAGTGTCAACAA
-NTCAAGTGG------
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTWCAAGTGTCAACAA
-NTCAAGTGGN-----
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTWCAAGTGTCAACAA
----AGGTGTGAAM--
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A
A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TTWCAAGTGTCAACAA-
-----TATGTAAACANG
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTWCAAGTGTCAACAA----
---AAAAAGTAAACAAAGAC
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTWCAAGTGTCAACAA--
---NCWRWGTAAACANSV
 A C G T A C G T G C A T G T A C C G T A G C T A C T A G A C G T A C T G A C G T G A T C T C G A C G T A G A T C G C T A C G T A A C G T A C G T
A C G T A C G T A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G