Information for 5-TTTATTGGCT (Motif 3)

C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
Reverse Opposite:
C T G A C T A G G A T C G T A C G C T A C T G A A C G T C T G A G T C A G C T A
p-value:1e-35
log p-value:-8.174e+01
Information Content per bp:1.655
Number of Target Sequences with motif126.0
Percentage of Target Sequences with motif17.28%
Number of Background Sequences with motif2092.3
Percentage of Background Sequences with motif4.70%
Average Position of motif in Targets47.9 +/- 25.7bp
Average Position of motif in Background48.7 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCT
NTTTTATTGG--
 A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCT
TTTTTATTGG--
 A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCT-
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCT
NTTTTATTGG--
 A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCT-
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTTATTGGCT
TTTTATKRGG-
 A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCT
TTTTATTRGN-
 A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------TTTATTGGCT-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCT
TTTTATTGC--
 A C G T C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTTATTGGCT---
-TGATTGGCTANN
 C G A T C A G T G A C T T G C A G A C T C G A T C A T G C T A G G A T C G A C T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T