Information for 20-TTCTGCCATGCAG (Motif 27)

A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C C T G A A C G T A C T G A T C G A G T C C G T A A C T G C G T A C G T A
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 16.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTCTGCCATGCAG
GGTCTGGCAT----
 A C G T A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTCTGCCATGCAG
--TTGCCAAG---
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTCTGCCATGCAG
-SCTGTCAVTCAV
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTCTGCCATGCAG
-NCTGTCAATCAN
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGCCATGCAG
NATTGTGCAAT----
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTCTGCCATGCAG
---TBGCACGCAA
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTCTGCCATGCAG
ANATTTTTGCAANTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TTCTGCCATGCAG---
-SCAGYCADGCATGAC
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TTCTGCCATGCAG
------CACGCA-
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TTCTGCCATGCAG
GSCTGTCACTCA-
 A C G T A C G T A G T C A C G T A C T G A T G C G T A C C G T A A G C T A C T G G T A C C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T