Information for 13-CTMTRAWATGGMT (Motif 9)

A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T
Reverse Opposite:
C T G A A C G T A G T C A G T C C G T A A C G T C G A T A C G T A G C T C G T A A C G T C G T A C T A G
p-value:1e-11
log p-value:-2.621e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 27.1bp
Average Position of motif in Background23.6 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTMTRAWATGGMT--
---CAAGATGGCGGC
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTMTRAWATGGMT
GNCTATAAAAGG---
 A C G T A C G T A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTMTRAWATGGMT
CCTTTGATGT----
 A C G T A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTMTRAWATGGMT
---NNATAAGGNN
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T
A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTMTRAWATGGMT---
--CTAATATTGCTAAA
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTMTRAWATGGMT---
--CTAATATTGCTAAA
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTMTRAWATGGMT--
NANTTTCAAGTGGTTAN
 A C G T A C G T A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTMTRAWATGGMT--
GTATAAAAGGCGGGG
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTMTRAWATGGMT--
GTATAAAAGGCGGGG
 A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTMTRAWATGGMT
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A G T C A C G T G T C A A C G T C T G A C G T A C G T A C G T A A C G T C T A G A C T G T G C A A G C T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T