Information for 4-TTTATTGGCH (Motif 5)

A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
Reverse Opposite:
C A T G T A C G A G T C G A T C G T C A C G T A A C G T G T C A C G T A C G T A
p-value:1e-28
log p-value:-6.536e+01
Information Content per bp:1.743
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.82%
Number of Background Sequences with motif690.7
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets49.3 +/- 23.0bp
Average Position of motif in Background49.0 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCH
TTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-TTTATTGGCH
TTTTATKRGG-
 A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCH
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCH
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCH
TTTTATTRGN-
 A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCH-
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCH
TTTTATTGC--
 A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.87
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCH-
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---TTTATTGGCH
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCH
NTTTTATTACN-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T C T A G T C A G A T G C G T A C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T