Information for 2-AACARAAAAGAAC (Motif 3)

C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
Reverse Opposite:
A T C G A C G T G C A T A G T C A G C T A G C T G A C T C A G T A G C T A C G T C T A G A C G T A C G T
p-value:1e-74
log p-value:-1.723e+02
Information Content per bp:1.781
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif9.63%
Number of Background Sequences with motif161.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets51.0 +/- 20.7bp
Average Position of motif in Background48.9 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----AACARAAAAGAAC---
AGTAAACAAAAAAGAACANN
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AACARAAAAGAAC
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AACARAAAAGAAC
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------AACARAAAAGAAC
ATATCAAAACAAAACA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AACARAAAAGAAC
AACAAT-------
 C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AACARAAAAGAAC
NTTNAGAACAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AACARAAAAGAAC
TAGTGAACAATAGATTT-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AACARAAAAGAAC
-ANAGATAAGAA-
 C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AACARAAAAGAAC
AACAAACAACAAGAG--
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AACARAAAAGAAC
TTTAGAACAATAAAAT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A T C G A G C T A C T G A C T G A C T G A A C T G C G T A C G T A A T G C
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T A C G T A C G T