Information for 11-CCAGTCAAAC (Motif 14)

A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
Reverse Opposite:
A T C G A G C T A G C T C G A T C T A G G T C A A G T C C G A T C T A G A C T G
p-value:1e-10
log p-value:-2.355e+01
Information Content per bp:1.842
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif91.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets50.1 +/- 26.2bp
Average Position of motif in Background51.2 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAAAC-
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAAAC
GCTGTCAA--
 A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAAAC-
AATTACCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAAAC
CCTGTCAA--
 A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAAAC-
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAAAC-----
SCAGYCADGCATGAC
 A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAGTCAAAC
CCAATAAAAC
 A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAAAC-
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAAAC
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAAAC
BCAGACWA--
 A G T C G A T C C G T A A C T G A C G T G A T C C G T A C T G A C T G A A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T