Information for 5-CCTCTAGTGTCTGAAA (Motif 3)

T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
Reverse Opposite:
G A C T A G C T C G A T A G T C C G T A A C T G C T G A A G T C C T G A A T G C A C G T G T C A A C T G C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.198e+01
Information Content per bp:1.664
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.0 +/- 23.3bp
Average Position of motif in Background37.1 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTCTAGTGTCTGAAA---
--NNTNNTGTCTGGNNTNG
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTAGTGTCTGAAA
GGCTCYAKCAYC-----
 A C G T T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGTCTGAAA
-CTYRAGTGSY-----
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CCTCTAGTGTCTGAAA
NGNTCTAGAACCNGV--
 A C G T T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.48
Offset:6
Orientation:forward strand
Alignment:CCTCTAGTGTCTGAAA
------CTGTCTGG--
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CCTCTAGTGTCTGAAA
----VBSYGTCTGG--
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.47
Offset:7
Orientation:forward strand
Alignment:CCTCTAGTGTCTGAAA-
-------GGTCTGGCAT
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:8
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTAGTGTCTGAAA
GKMTCADRTTWC-----
 A C G T T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGTCTGAAA
-NTCAAGTGG------
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CCTCTAGTGTCTGAAA
-BTBRAGTGSN-----
 T G A C T G A C C G A T T G A C A C G T C G T A A T C G G A C T A C T G G A C T G T A C A C G T C T A G C G T A C T G A C G T A
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T