Information for 19-CTCCTCTCTGTGA (Motif 20)

A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
Reverse Opposite:
C G A T G A T C G C T A A T G C C G T A T A C G C T G A T C A G C G T A C A T G C T A G C G T A T C A G
p-value:1e-8
log p-value:-2.021e+01
Information Content per bp:1.729
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif457.5
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets54.7 +/- 26.3bp
Average Position of motif in Background51.1 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTCTCTGTGA-----
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.63
Offset:6
Orientation:forward strand
Alignment:CTCCTCTCTGTGA
------GCTGTG-
 A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCCTCTCTGTGA
GACCCCCCGCTGTG-
 A C G T A C G T A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCCTCTCTGTGA
CCCCCTGCTGTG-
 A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCCTCTCTGTGA
---CCTGCTGAGH
 A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCCTCTCTGTGA
GACCCCCCGCTGCGC
 A C G T A C G T A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCCTCTCTGTGA
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCCTCTCTGTGA--
NNTCCTGCTGTGNNN
 A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTCTCTGTGA--
ANTCCTTTGTCTNNNN
 A C G T A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCCTCTCTGTGA
--ACTTCCTGTT-
 A G T C G C A T A G T C G A T C G C A T A G T C A G C T A T G C A C G T A T C G C G A T C A T G G C T A
A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T