Information for 18-AGAGAATTAGGCA (Motif 19)

C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
Reverse Opposite:
C G A T A C T G A T G C G T A C G A C T C G T A G C T A A G C T C A G T G T A C A G C T A G T C G A C T
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.679
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.19%
Number of Background Sequences with motif587.7
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets49.5 +/- 25.0bp
Average Position of motif in Background51.8 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGAATTAGGCA
AAGAGGATTAG---
 A C G T C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGAGAATTAGGCA--
AAACATAATGAGGTTGC
 A C G T A C G T C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGAGAATTAGGCA--
GACGATAATGAGCTTGC
 A C G T A C G T C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAATTAGGCA
ANAGATAAGAA----
 A C G T A C G T C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGAGAATTAGGCA
--TTAATTAG---
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAGAATTAGGCA
---TAATTAGN--
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAGAATTAGGCA
--NTAATTAG---
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAGAATTAGGCA
AGATAAGA-----
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGAGAATTAGGCA
-NNTAATTAGN--
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
A C G T T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAGAATTAGGCA
--NTAATTAG---
 C T G A C T A G C T G A C A T G G C T A C T G A C G A T G C A T C T G A A C T G T A C G T G A C C G T A
A C G T A C G T T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T