Information for 6-ACTRRAGCWAAAM (Motif 11)

C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T C G A T C G T A A C T G A G T C A C G T A G T C A G T C C G T A A C T G A C G T
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.8 +/- 21.9bp
Average Position of motif in Background37.3 +/- 38.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------ACTRRAGCWAAAM
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ACTRRAGCWAAAM
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

IRF7/MA0772.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACTRRAGCWAAAM-
ACGAAAGCGAAAGT
 C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A A C G T
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACTRRAGCWAAAM
ATGTACAGTAGCAAAG-
 A C G T A C G T A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACTRRAGCWAAAM-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACTRRAGCWAAAM-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACTRRAGCWAAAM
GRTGMTRGAGCC----
 A C G T A C G T A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ACTRRAGCWAAAM
-TTCGCGCGAAAA
 C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
A C G T A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACTRRAGCWAAAM---
-CAAAATCGAAACTAA
 C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A A C G T A C G T A C G T
A C G T T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

Pax6/MA0069.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-ACTRRAGCWAAAM
AANTCATGCGTGAA
 A C G T C G T A G T A C A C G T C T A G C T A G C G T A A C T G G T A C C G A T C G T A C G T A C G T A G T C A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A