Information for 13-YCKCCATAAK (Motif 22)

A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G
Reverse Opposite:
G T A C C G A T A C G T C G T A A C G T A C T G A C T G G T C A A C T G C T A G
p-value:1e-6
log p-value:-1.597e+01
Information Content per bp:1.881
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif20.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets69.9 +/- 21.2bp
Average Position of motif in Background52.0 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--YCKCCATAAK
GTCCGCCATTA-
 A C G T A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:YCKCCATAAK-
--GCAATAAAA
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Neurog1/MA0623.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:YCKCCATAAK--
--ACCATATGGT
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

NEUROD2/MA0668.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:YCKCCATAAK--
--GCCATATGGT
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCKCCATAAK---
-NGYCATAAAWCH
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YCKCCATAAK--
--GTCATAAAAN
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Bhlha15/MA0607.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:YCKCCATAAK-
---CCATATGT
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

E2F7/MA0758.1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----YCKCCATAAK
TTTTCCCGCCAAAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:YCKCCATAAK--
-----TTAATTG
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:YCKCCATAAK--
--ACCATATGTT
 A G T C A G T C A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T