Information for 5-AGCGGGTTTC (Motif 9)

C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C
Reverse Opposite:
A C T G C T G A T G C A C G T A A G T C T A G C A G T C A T C G A G T C A C G T
p-value:1e-12
log p-value:-2.815e+01
Information Content per bp:1.859
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif38.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.7 +/- 25.4bp
Average Position of motif in Background46.0 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGCGGGTTTC-
-GGGGATTTCC
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCGGGTTTC-
-GGGAATTTCC
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGCGGGTTTC---
---TGGTTTCAGT
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCGGGTTTC--
NGGGGATTTCCC
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCGGGTTTC-
-GGGGATTTCC
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCGGGTTTC------
AATGGGGTATCACGTTT
 A C G T C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

Six3/MA0631.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCGGGTTTC------
GATAGGGTATCACTAAT
 A C G T C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCGGGTTTC------
GATAGGGTATCACTAAT
 A C G T C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCGGGTTTC-
-GGGAATTTCC
 C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

PH0165.1_Six6_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCGGGTTTC------
AATAGGGTATCAATTAT
 A C G T C G T A A C T G A T G C A C T G A C T G T C A G A C G T A C G T A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T